HCLSIG/LODD/Meetings/2009-01-21 Conference Call
Conference Details
- Date of Call: Wednesday January 21, 2009
- Time of Call: 11:00am Eastern Daylight Time (EDT), 16:00 Greenwich Mean Time (GMT), 17:00 Central European Time (CET)
- Dial-In #: +1.617.761.6200 (Cambridge, MA)
- Dial-In #: +33.4.89.06.34.99 (Nice, France)
- Dial-In #: +44.117.370.6152 (Bristol, UK)
- Participant Access Code: 4257 ("HCLS").
- IRC Channel: irc.w3.org port 6665 channel #HCLS (see W3C IRC page for details, or see Web IRC)
- Duration: ~1h
- Convener: Susie
- Scribe: Anja
Agenda
- Pharma use case - Susie, Bosse
- Physician use case - Don, Matthias
- Patient use case - Kei, Jun
- Progress on data set conversion - Chris, Anja
- Plans for writing the paper - Susie
- AOB
Minutes
Attendees: Chris, TN, Bosse, Anja, Matthias, Scott, Oktie, Don, Kei, Susie
- Susie: http://esw.w3.org/topic/HCLSIG/LODD/Business
- Susie: ongoing trials don't offer much information on chemical compounds used etc.
- Susie: Lilly and BioRDF interested in Alzheimer's Disease
- Chris, Anja: choosed Use Case 2 as for datasets already available
- Bosse: visual path for navigating the data needed
- Bosse: Marbles looks good but not good enough
- http://beckr.org/marbles?uri=http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugs/DB00001
- Chris: Marbles combines different data sources
- Susie: Querying/Browsing?
- Chris: SPARQL query for drugs, then browse Marbles e.g.
- Susie: narrow down drugs/trials, like trials from early 2009
- Susie: interested in including Alzforum
- http://www.alzforum.org/drg/drc/default.asp, but not many linkage points
- Susie: Tim Clark also working on Alzheimer's
- Chris: CT.gov and DrugBank online as linked data
- Chris: Bio2RDF has many datasets, but is offline right now
- Susie: which data sources will be most useful to publish next? (for the paper and the use case)
- matthias_samwald: Bio2RDF _does_ contain Pubchem, see
- http://www.freebase.com/view/user/bio2rdf/public/sparql
- Chris: what about KEGGDrug, PubChem, Diseasome
- Susie: KEGGDrug looks more interesting than PubChem
- Chris, Anja: will ask Bio2RDF for KEGGDrug, meanwhile publish Diseasome
- Susie: OrangeBook would be nice
- Susie: DrugBank offers brand names too
- Susie: DrugDigest or MedlinePlus for more text on drugs and side effects
- Donald_Doherty: I must leave for a noon meeting. Matthias and I haven't had a chance to pull our...
- Donald_Doherty: work together - my fault. We should be able to meet vary soon and complete.
- Bosse, Susie: look for structured datasets available on side effects
- kei: http://esw.w3.org/topic/HCLSIG/LODD/Business
- AnjaJentzsch: Susie, have a look at DailyMed, this is available as structured text:
- http://dailymed.nlm.nih.gov/dailymed/drugInfo.cfm?id=8135#section-14.1
- Kei: share treatment alternatives via Social Bookmarking
- matthias_samwald: http://faviki.com
- AnjaJentzsch: Kei: semantic tags (from DBpedia), multilingual approach
- Chris,Susie: linking via annotation tags looks interesting