HCLSIG/SWANSIOC/Meetings/2009-02-13 Conference Call
Conference Details
- Date of Call: Friday February 13, 2009
- Time of Call: 11:00am Eastern Time
- Dial-In #: +1.617.761.6200 (Cambridge, MA)
- Dial-In #: +33.4.89.06.34.99 (Nice, France)
- Dial-In #: +44.117.370.6152 (Bristol, UK)
- Participant Access Code: 4257 ("HCLS")
- IRC Channel: irc.w3.org port 6665 channel #HCLS (see W3C IRC page for details, or see Web IRC)
- Duration: ~1 hour
- Convener: Tim Clark
- Scribe:
Agenda
- Progress Report
- - SWAN-SIOC IG Note status: Paolo Ciccarese and Alex Passant
- - SWAN-SIOC-myExperiment status: Tim Clark, Susie Stephens and David Newman Lilly Experiment Ontology
- Presentation on SAAGE: Sudeshna Das, Harvard University
- - Semantic Annotation and Analysis of Genomic Experiments
- Action items and next meeting schedule
Minutes
<Susie> Attendees: David, Paolo, Alex, Tim, Marco, Matthias, Susie, Oliver, Kei, EricP
<Susie> Agenda
<Susie> 1. Note
<Susie> 2. Lilly ontology integration
<Susie> 1. Progress on note
<Susie> Alex has been very busy in January
<Susie> Alex hopes to make more progress on note soon
<Susie> SIOC part of IG note should be well drafted in time for the next call
<Susie> Paolo had problems with cvs, working to fix with EricP
<Susie> Paolo has done the introduction for his part of the note
<Susie> Paolo has everything else to do
<Susie> Paolo needs to figure out how to shape the document
<Susie> Paolo will discuss this with Alex
<Susie> Expect to finish document by the end of March
<Susie> Will need the document to be reviewed as well
<Susie> Susie and Tim can gain access to the note for review in about 4 weeks
<Susie> Could search tools at DERI be used for SWAN/SIOC
<Susie> Alex: Sindice used to index data, so wouldn't work for this task
<Susie> Alex: It might be possible to use SWSE though
<Susie> Alex: will find out if this'll work, or if a tool from Vit will work
<Susie> Tim: It'd be good to have a tool that works with the data model
<Susie> Tim: several comminities will be using parts of swan
<Susie> Tim: including PD, StemBook, AD
<Susie> Tim, spoken to 5 groups over the last week
<Susie> Tim: good if all export to the same place
<Susie> Tim: AD and PD will have access to db of antibodies
<Susie> Tim: Will use Drupal
<Susie> Tim: same for cell lines
<Susie> Tim: Couldn't you search across a common store, if both about an antibody
<Susie> Tim: Want to know if anything posted across web about certain entities
<Susie> Tim: Will send some use cases
<Susie> Alex to post on the wiki
<Susie> 2. MyExperiment & Lilly Experiment
<Susie> Maurice has asked to hand ontology work to Yimin Wang
<Susie> Yimin has relevant background in ontology integration
<Susie> Discovered Yimin is interested in working on the project
<Susie> Schedule call with Tim and David to put the business justification
<Susie> Susie to consider use cases
<Susie> Lilly is also looking to extend collaborations with Carole Goble
<Susie> Sudeshna working on creating a semantic store for microarray data
<Susie> Tim: Also an interesting use case
<Susie> Tim: Will prepare talk for C-SHALS
<Susie> Tim: Will credit everyone for their hard work
<Susie> David: voiD and EXPO may also be useful
<alepas> http://rdfs.org/ns/void
<Susie> Tim: Aware of EXPO, but not voiD
<Susie> David: voiD is about linking data sets
<david_newman> http://rdf.myexperiment.org/generic/spec
<Susie> Matthias: It's also being explored in BioRDF
<Susie> Marco: Jun Zhao is the person working on voiD
<david_newman> http://rdfs.org/ns/void/html
<Susie> David: rkbexplorere might help for find data on entities across web pages
<david_newman> http://www.rkbexplorer.com/
<Susie> David: this is Hugh Glaser's project
<Susie> Tim: Next Scientific Discourse call in 2 weeks